2.1 Home ============ | Link: https://bio.liclab.net/scvmap/ On the homepage, we provide an intuitive and concise interface, and support **simple** searches. .. image:: ../img/home/home.png -------------------- Search principle: | Here, we provide five search contents corresponding to the five search functions on the "`Search `_" page. 2.1.1 Trait or disease search ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ :Input Type 1: When a user enters a **Trait or disease ID** (e.g., ``trait_id_894``), the system directs to the detailed page (`https://bio.liclab.net/scvmap/detail?traitId=trait_id_894 `_) of the corresponding causal variant effect data. .. image:: ../img/home/traitById.png :Input Type 2: Upon entering a trait or disease name (e.g., ``Alzheimer's disease``), the user is presented with a table listing relevant results (`https://bio.liclab.net/scvmap/simple_search?title=trait&value=Alzheimer's+disease `_). This list is derived from a fuzzy search conducted on the input term using columns ``Trait abbreviation`` and ``Trait description`` from the ``Trait or disease data`` tab on the `Data-browse `_ page, ensuring comprehensive and relevant matches. .. image:: ../img/home/traitByAlzheimer.png Clicking on the ``Trait ID`` will take you to the corresponding detail page to view detailed content. Help document for users to view detail pages: `https://scvmap.readthedocs.io/en/latest/usage/detail.html `_ .. tip:: When the search field is empty, clicking the search button will return data for all traits and diseases. .. note:: Here, if the fuzzy search encounters the word "disease", it will be ignored in the search. And it has a slightly different retrieval process from the corresponding function of "Search information by category or source cohort" on the "`Search `_" page, but the retrieval results are the same. 2.1.2 Single cell sample search ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ :Input Type 1: When a user enters a **Sample ID** (e.g., ``sample_id_1``), the system directs to the detailed page (`https://bio.liclab.net/scvmap/detail?detail?sampleId=sample_id_1 `_) of the corresponding causal variant effect data. .. image:: ../img/home/sampleById.png :Input Type 2: Upon entering a trait or disease name (e.g., ``PBMC``), the user is presented with a table listing relevant results (`https://bio.liclab.net/scvmap/simple_search?title=sample&value=PBMC `_). This list is derived from a fuzzy search conducted on the input term using columns ``Tissue type`` and ``Health type description`` from the ``Single cell chromatin accessibility data`` tab on the `Data-browse `_ page, ensuring comprehensive and relevant matches. In addition, it also supports fuzzy search of the "Sample label" field in the `detail `_ page. .. image:: ../img/home/sampleByPBMC.png Clicking on the ``Sample ID`` will take you to the corresponding detail page to view detailed content. Help document for users to view detail pages: `https://scvmap.readthedocs.io/en/latest/usage/detail.html `_ .. tip:: When the search field is empty, clicking the search button will return data for all scATAC-seq samples. .. note:: It has a slightly different retrieval process from the corresponding function of "Search for information by tissue type or cell type" on the "`Search `_" page, but the retrieval results are the same. 2.1.3 Gene search ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ When a user enters a **gene** (e.g., ``RCC2``), the system directs to the detailed page (`http://bio.liclab.net/scvmap/gene_detail?gene=RCC2 `_) of the gene. .. image:: ../img/home/gene.png Help document for users to view gene details page: `https://scvmap.readthedocs.io/en/latest/usage/search/gene.html `_ .. note:: It is completely consistent with the retrieval process and results of the "Search information by gene" function on the "`Search `_" page. 2.1.4 TF search ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ When a user enters a **TF** (e.g., ``HIF1A``), the system directs to the detailed page (`http://bio.liclab.net/scvmap/tf_detail?tf=HIF1A `_) of the TF. .. image:: ../img/home/tf.png Help document for users to view TF details page: `https://scvmap.readthedocs.io/en/latest/usage/search/tf.html `_ .. note:: It is completely consistent with the retrieval process and results of the "Search information by TF" function on the "`Search `_" page. 2.1.5 Variant search ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ When a user enters a **rsID** (e.g., ``rs57142672``), the system directs to the detailed page (`http://bio.liclab.net/scvmap/variant_detail?variant=rs57142672 `_) of the causal variant. .. image:: ../img/home/variant.png Help document for users to view variant details page: `https://scvmap.readthedocs.io/en/latest/usage/search/variant.html `_ .. note:: It is completely consistent with the retrieval process and results of the "Search information by SNP" function on the "`Search `_" page.